When it click Payroll Details it says "Nice one! Your company information and employee details meet ATO requirements." (but it doesn't say Phase one or two which I find less than encouraging).
Then when I click Payroll Reporting Centre, it takes me to the web version and in the top right corner says "Reporting on STP Phase 2" so I assume it is all done.
Also got a bunch of $0.00 payroll transactions (one for each employee including inactive ones). But I wish MYOB was a bit more proactive about assuring everything is complete and up to date.
Thank you for your reply.